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Peer-Reviewed Journals (IF: 2023)

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  1. Shih-Hsun Walter Hung, Pin-Hsien Yeh, Tsai-Ching Huang, Shao-Yu Huang, I-Chen Wu, Chia-Ho Liu, Yu-Hsi Lin, Pei-Ru Chien, Fan-Chen Huang, Ying-Ning Ho, Chih-Horng Kuo, Hau-Hsuan Hwang, En-Pei Isabel Chiang, Chieh-Chen Huang*. 2024. A cyclic dipeptide for salinity stress alleviation and the trophic flexibility of endophyte provide insights into saltmarsh plant-microbe interactions. ISME Communications, ycae041. (IF: 5.1, Ecology, 85.8%)

  2. Jiji Kannan, Ka-Lai Pang, Ying-Ning Ho, Pang-Hung Hsu* and Li-Li Chen*. 2024. A Comparison of the Antioxidant Potential and Metabolite Analysis of Marine Fungi Associated with the Red Algae Pterocladiella capillacea from Northern Taiwan. Antioxidants, 13(3), 336. (IF: 6, Chemistry & medicinal, 89.6%)

  3. Hsiao-Tsu Yang, Yi-Hsuan Huang, Ying-Ning Ho*. 2024. Oceanimonas pelagia sp. nov., a novel biosurfactant producing and plastic-degrading potential bacterium isolated from marine coastal sediment. Antonie van Leeuwenhoek,117:49. (IF: 0.98, Microbiology, 16.5%)

  4. Gowri Krishna Girija, Li-Chun Tseng, Yu-Ling Chen, Pei-Jie Meng, Jiang-Shiou Hwang and Ying-Ning Ho*. 2023. Microbiome variability in invasive coral (Tubastraea aurea) in response to diverse environmental stressors. Frontiers in Marine Science, 10:1234137. (IF: 2.8, MARINE & FRESHWATER BIOLOGY, 88.7%)

  5. Priyanka Muthu, Yun-Cheng Lee, Gowri Krishna Girija, Yu-Ling Chen, Ying-Ning Ho* and Jiang-Shiou Hwang*. 2023. Bacterial community responses of the hydrothermal vent crab Xenograpsus testudinatus fed on microplastics. Frontiers in Ecology and Evolution, 11:1203647. (Co-corresponding author) (IF: 2.4, ECOLOGY, 58.2%)

  6. Chongyang Yang, Ning Han, Chihiro Inoue, Yu-Liang Yang, Hideaki Nojiri, Ying-Ning Ho*, Mei-Fang Chien*. 2022. Rhizospheric plant-microbe synergistic interactions achieve efficient arsenic phytoextraction by Pteris vittata. Journal of Hazardous Materials, 434: 128870. (IF: 14.224, Engineering, Civil) (Co-corresponding author). 

  7. Ching-Chih Lin, Sin Yong Hoo, Li-Ting Ma, Chih Lin, Kai-Fa Huang, Ying-Ning Ho, Chi-Hui Sun, Han-Jung Lee, Pi-Yu Chen, Lin-Jie Shu, Bo-Wei Wang, Wei-Chen Hsu, Tzu-Ping Ko, and Yu-Liang Yang*. 2022. Integrated omics approach to unveil antifungal bacterial polyynes as acetyl-CoA acetyltransferase inhibitors. Communication Biology,5(1), 1-8. (IF: 6.268, Agricultural and Biology Sciences).

  8. Tse-Yen Liu, Chao-Han Chen, Yu-Liang Yang, Isheng J. Tsai, Ying-Ning Ho*, and Chia-Lin Chung*. 2022. The brown root rot fungus Phellinus noxius affects microbial communities in different root-associated niches of Ficus trees. Environmental microbiology. (Co-corresponding author)

  9. Ying-Ning Ho*, Yu-Ling Chen, Ding-Yang Liu. 2021. Portable and rapid sequencing device with microbial community guided culture strategies for precious field and environmental samples. mSystems. (IF: 6.496, Ecology, Evolution, Behavior and Systematics)(One of sponsored collections of mSystems 2021 early-career scientists)

  10. Shang-Tse Ho*, Ying-Ning Ho*, Chih Lin, Wei-Chen Hsu, Han-Jung Lee, Chia-Chi Peng, Han-Tan Cheng and Yu-Liang Yang*. 2021. Integrated Omics Strategy Reveals Cyclic Lipopeptides Empedopeptins from Massilia sp. YMA4 and Their Biosynthetic Pathway. Marine drugs, 19,209. (IF: 5.118, Chemistry) (Co-first author)

  11. Ying-Ning Ho, Sin Yong Hoo, Bo-Wei Wang, Chi-Ting Hsieh, Ching-Chih Lin, Chi-Hui Sun, Chia-Chi Peng, Chih Lin, Yu-Liang Yang. 2021. Specific inactivation of an anti-fungal bacterial siderophore by a fungal plant pathogen. The ISME Journal. (IF: 9.23, Microbiology).

  12. Chongyang Yang; Ying-Ning Ho; Chihiro Inoue; Mei-Fang Chien*. 2020. Long-term effectiveness of microbe-assisted arsenic phytoremediation by Pteris vittata in field trials. Science of the Total Environment. 740: 140137. (IF: 5.589, Environmental Sciences).

  13. Chongyang Yang, Ying-Ning Ho, Ryota Makita, Chihiro Inoue, Mei-Fang Chien*. 2020. Cupriavidus basilensis strain r507，a potential toxic arsenic extraction helper, increases the accumulation of arsenic in Pteris vittata. Ecotoxicology and Environmental Safety. 190 (IF: 4.527, Environmental Sciences)

  14. Mei-Fang Chien, Ying-Ning Ho, Hui-Erh Yang, Masaru Narita, Keisuke Miyauchi, Ginro Endo, Chieh-Chen Huang*. 2019. Identification of a Novel Arsenic Resistance Transposon Nested in a Mercury Resistance Transposon of Bacillus sp. MB24. Microorganisms. 7(11): 566. (IF: 4.16, Microbiology)

  15. Chongyang Yang, Ying-Ning Ho, Ryota Makita, Chihiro Inoue,Mei-Fang Chien* 2019. A multifunctional rhizobacterial strain with wide application in different ferns facilitates arsenic phytoremediation. Science of the Total Environment. 712 (IF: 5.589, Environmental Sciences)

  16. Chongyang Yang, Mei-Fang Chien, Ying-Ning Ho, Chihiro Inoue. 2019. Phosphorus- and iron-deficiency stresses affect arsenic accumulation and root exudates in Pteris vittata. International Journal of Environmental Science and Development. 10: 12

  17. Mei-Fang Chien, Ying-Ning Ho, Hui-Tzu Lin, Kuo-Hsing Lin, Ginro Endo, Chieh-Chen Huang*. 2019. MerB3, an organomercurial lyase of Bacillus as an antidote against organomercurial poisoning. Journal of Environmental Biotechnology. 19(1): 73-80.

  18. Ying-Ning Ho, Hsin-Chi Tsai, Bing-Mu Hsu*, and Chien-Shun Chiou. 2018. The association of Salmonella enterica from aquatic environmental and clinical samples in Taiwan. Science of the Total Environment. 15(624): 106-113. (IF: 5.589, Environmental Sciences)

  19. Ying-Ning Ho, Lin-Jie Shu and Yu-Liang Yang*. 2017. Imaging mass spectrometry for metabolites: technical progress, multimodal imaging and biological interactions. Wiley interdisciplinary Reviews: Systems Biology and Medicine. Doi: 10.1002/wsbm.1387. (Review paper) (IF: 3.709, medicine, research & experimental)

  20. Ying-Ning Ho, Ming-Yuan Chou, Hsin-Chi Tsai, Tung-Yi Huang, Cheng-Wei Fan, and Bing-Mu Hsu*. 2017. Empirical testing of modified Salmonella MLST in aquatic environmental samples by in silico analysis. Science of the Total Environment 581-582:378-385. (IF: 5.589, Environmental Sciences)

  21. Wen-Chien Huang, Yi-Pen Chou, Po-Min Kao, Tsui-Kang Hsu, Hung-Chang Su, Ying-Ning Ho, Yi-Chun Yang, Bing-Mu Hsu*. 2016. Nested-PCR and TaqMan real-time quantitative PCR assays for human adenoviruses in environmental waters. Water Science and Technology. 73(8): 1832-4. DOI: 10.2166/wst.2016.004 (IF: 1.6245, Water Resources)

  22. Wen-Chien Huang, Bing-Mu Hsu*, Po-Min Kao, Chi-Wei Tao, Ying-Ning Ho, Chun-Wei Kuo, Yu-Li Huang. 2016. “Seasonal distribution and prevalence of diarrheagenic Escherichia coli in different aquatic environments in Taiwan” Ecotoxicology and Environmental Safety. 124:37-41. (IF: 4.527, Environmental Sciences)

  23. Chi-Wei Tao, Bing-Mu Hsu*, Po-Min Kao, Wen-Chien Huang, Tsui-Kang Hsu, Ying-Ning Ho, Yen-Ju Lu and Cheng-Wei Fan. 2016. “Seasonal difference of human adenoviruses in a subtropical river basin based on one-year monthly survey” Environmental Science and Pollution Research. 23:2928–2936 (IF: 2.914, Environmental Sciences)

  24. Zhon-Min Huang, Bing-Mu Hsu*, Po- Min Kao, Tien-Yu Chang, Tsui-Kang Hsu, Ying-Ning Ho, Yi-Chun Yang, Yu-Li Huang. 2015. Prevalence, quantification and typing of human adenoviruses detected in river water in Taiwan. Environmental Science and Pollution Research. 22(11): 8359-8366. (IF: 2.914, Environmental Sciences)

  25. Ying-Ning Ho, Chieh-Chen Huang*. 2015. Draft Genome Sequence of Burkholderia cenocepacia Strain 869T2, a Plant-Beneficial Endophytic Bacterium. Genome Announcements. 12;3(6). pii: e01327-15.doi:10.1128/genomeA.01327-15.

  26. Dony Chacko Mathew, Ying-Ning Ho, Ronnie Gicaraya Gicana, Gincy Marina Mathew, Mei-Chieh Chien, Chieh-Chen Huang*. 2015. A rhizosphere-associated symbiont, Photobacterium spp. strain MELD1, and its targeted synergistic activity for phytoprotection against mercury. Plos One. 10(3): e0121178.doi: 10.1371/journal.pone. 0121178 (IF: 2.776, Multidisciplinary Sciences)

  27. Ying-Ning Ho, Hsing-Mei Chiang, Chih-Ping Chao, Ching-Chung Su, Hui-Fang Hsu, Chen-tong Guo, Ju-Liang Hsieh, Chieh-Chen Huang*. 2015. In planta biocontrol of soil-borne Fusarium wilt of banana through a plant endophytic bacterium, Burkholderia cenocepacia 869T2. Plant and soil 387:295-306 (IF: 3.259, Agronomy)

  28. Ying-Ning Ho, Ju-Liang Hsieh, Chieh-Chen Huang*. 2013. Construction of a plant-microbe phytoremediation system: combination of vetiver grass with a functional endophytic bacterium, Achromobacter xylosoxidans F3B, for aromatic pollutants removal. Bioresource Technology 145:43-47. (IF: 6.669, Environmental Engineering)

  29. Ying-Ning Ho, Dony C Mathew, Shu-Chuan Hsiao, Chun-Hao Shih, Mei-Fang Chien, Hsing-Mei Chiang, Chieh-Chen Huang*. 2012. Selection and application of endophytic bacterium Achromobacter xylosoxidans strain F3B for improving phytoremediation of phenolic pollutants. Journal of Hazardous Materials 219-220:43-49. (IF: 7.65 (6.393), Engineering, Civil)

  30. Ying-Ning Ho, Chun-Hao Shih, Shu-Chuan Hsiao, Chieh-Chen Huang*. 2009. A novel endophytic bacterium, Achromobacter xylosoxidans, helps plants against pollutant stress and improves phytoremediation. Journal of Bioscience and Bioengineering 108: 94. (Part of special issue: APBioChEC2009) (IF: 2.808, Biotechnology & applied microbiology)

  31. Fo-Ting Shen, Jyun-Liang Lin, Chieh-Chen Huang, Ying-Ning Ho, A.B. Arun, Li-Sen Young, Chiu-Chung Young*. 2009. Molecular detection and phylogenetic analysis of the catechol 1,2-dioxygenase gene from Gordonia spp. Systematic and Applied Microbiology 32: 291-300. (IF: 2.808, Biotechnology & applied microbiology)

 

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Non-Sci Journals

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  1. 劉則言、何攖寧、鍾嘉綾。 2021。都市林裡的隱藏者們－朋友或敵人。林業研究專訊。台北：行政院農業委員會林業試驗所。28(3):73-76

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Book Chapters

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  1. Ying-Ning Ho, Han-Jung Lee, Chi-Ting Hsieh, Chia-Chi Peng, Yu-Liang Yang* 2018. Chemistry and Biology of Salicyl-capped Siderophores. (Book series: Studies in Natural Product Chemistry, B978-0-444-64179-3, Publisher: Elsevier Science Publishers, Amsterdam, the Netherlands) Doi.org/10.1016/B978-0-444-64179-3.00013-X.

  2. Ying-Ning Ho, Dony Chacko Mathew, and Chieh-Chen Huang*. 2017. Plant-microbe ecology: Interactions of plants and symbiotic microbial communities. (Book: Plant ecology, ISBN 978-953-51-5385-6; Publisher: InTechOpen) DOI: 10.5772/intechopen. 69088.

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